Predictive Sequence Analysis of the Candidatus Liberibacter asiaticus Proteome
Identifieur interne : 001217 ( Main/Exploration ); précédent : 001216; suivant : 001218Predictive Sequence Analysis of the Candidatus Liberibacter asiaticus Proteome
Auteurs : Qian Cong [États-Unis] ; Lisa N. Kinch [États-Unis] ; Bong-Hyun Kim [États-Unis] ; Nick V. Grishin [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2012.
Abstract
Url:
DOI: 10.1371/journal.pone.0041071
PubMed: 22815919
PubMed Central: 3399792
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Predictive Sequence Analysis of the <italic>Candidatus</italic> Liberibacter asiaticus Proteome</title><author><name sortKey="Cong, Qian" sort="Cong, Qian" uniqKey="Cong Q" first="Qian" last="Cong">Qian Cong</name><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Kinch, Lisa N" sort="Kinch, Lisa N" uniqKey="Kinch L" first="Lisa N." last="Kinch">Lisa N. Kinch</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Kim, Bong Hyun" sort="Kim, Bong Hyun" uniqKey="Kim B" first="Bong-Hyun" last="Kim">Bong-Hyun Kim</name><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Grishin, Nick V" sort="Grishin, Nick V" uniqKey="Grishin N" first="Nick V." last="Grishin">Nick V. Grishin</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">22815919</idno><idno type="pmc">3399792</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3399792</idno><idno type="RBID">PMC:3399792</idno><idno type="doi">10.1371/journal.pone.0041071</idno><date when="2012">2012</date><idno type="wicri:Area/Pmc/Corpus">001117</idno><idno type="wicri:Area/Pmc/Curation">001116</idno><idno type="wicri:Area/Pmc/Checkpoint">000C40</idno><idno type="wicri:Area/Ncbi/Merge">001040</idno><idno type="wicri:Area/Ncbi/Curation">001040</idno><idno type="wicri:Area/Ncbi/Checkpoint">001040</idno><idno type="wicri:Area/Main/Merge">001231</idno><idno type="wicri:Area/Main/Curation">001217</idno><idno type="wicri:Area/Main/Exploration">001217</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Predictive Sequence Analysis of the <italic>Candidatus</italic> Liberibacter asiaticus Proteome</title><author><name sortKey="Cong, Qian" sort="Cong, Qian" uniqKey="Cong Q" first="Qian" last="Cong">Qian Cong</name><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Kinch, Lisa N" sort="Kinch, Lisa N" uniqKey="Kinch L" first="Lisa N." last="Kinch">Lisa N. Kinch</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Kim, Bong Hyun" sort="Kim, Bong Hyun" uniqKey="Kim B" first="Bong-Hyun" last="Kim">Bong-Hyun Kim</name><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author><author><name sortKey="Grishin, Nick V" sort="Grishin, Nick V" uniqKey="Grishin N" first="Nick V." last="Grishin">Nick V. Grishin</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas</wicri:regionArea><placeName><region type="state">Texas</region></placeName></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Candidatus</italic> Liberibacter asiaticus (<italic>Ca.</italic> L. asiaticus) is a parasitic Gram-negative bacterium that is closely associated with Huanglongbing (HLB), a worldwide citrus disease. Given the difficulty in culturing the bacterium and thus in its experimental characterization, computational analyses of the whole <italic>Ca.</italic> L. asiaticus proteome can provide much needed insights into the mechanisms of the disease and guide the development of treatment strategies. In this study, we applied state-of-the-art sequence analysis tools to every <italic>Ca.</italic> L. asiaticus protein. Our results are available as a public website at <ext-link ext-link-type="uri" xlink:href="http://prodata.swmed.edu/liberibacter_asiaticus/">http://prodata.swmed.edu/liberibacter_asiaticus/</ext-link>. In particular, we manually curated the results to predict the subcellular localization, spatial structure and function of all <italic>Ca.</italic> L. asiaticus proteins (<ext-link ext-link-type="uri" xlink:href="http://prodata.swmed.edu/liberibacter_asiaticus/curated/">http://prodata.swmed.edu/liberibacter_asiaticus/curated/</ext-link><underline>)</underline>. This extensive information should facilitate the study of <italic>Ca.</italic> L. asiaticus proteome function and its relationship to disease. Pilot studies based on the information from our website have revealed several potential virulence factors, discussed herein.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Bove, Jm" uniqKey="Bove J">JM Bove</name></author><author><name sortKey="Ayres, Aj" uniqKey="Ayres A">AJ Ayres</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gottwald, Tr" uniqKey="Gottwald T">TR Gottwald</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Folimonova, Sy" uniqKey="Folimonova S">SY Folimonova</name></author><author><name sortKey="Achor, Ds" uniqKey="Achor D">DS Achor</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kim, Js" uniqKey="Kim J">JS Kim</name></author><author><name sortKey="Sagaram, Us" uniqKey="Sagaram U">US Sagaram</name></author><author><name sortKey="Burns, Jk" uniqKey="Burns J">JK Burns</name></author><author><name sortKey="Li, 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Stock</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>États-Unis</li></country><region><li>Texas</li></region></list><tree><country name="États-Unis"><region name="Texas"><name sortKey="Cong, Qian" sort="Cong, Qian" uniqKey="Cong Q" first="Qian" last="Cong">Qian Cong</name></region><name sortKey="Grishin, Nick V" sort="Grishin, Nick V" uniqKey="Grishin N" first="Nick V." last="Grishin">Nick V. Grishin</name><name sortKey="Grishin, Nick V" sort="Grishin, Nick V" uniqKey="Grishin N" first="Nick V." last="Grishin">Nick V. Grishin</name><name sortKey="Kim, Bong Hyun" sort="Kim, Bong Hyun" uniqKey="Kim B" first="Bong-Hyun" last="Kim">Bong-Hyun Kim</name><name sortKey="Kinch, Lisa N" sort="Kinch, Lisa N" uniqKey="Kinch L" first="Lisa N." last="Kinch">Lisa N. Kinch</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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